Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2340158..2340426 | Replicon | chromosome |
| Accession | NZ_CP070162 | ||
| Organism | Escherichia coli strain FDAARGOS_1283 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2340196..2340298 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2340158..2340426 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K13_RS11410 | 2337319..2338758 | + | 1440 | WP_024187959.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K13_RS11415 | 2338876..2339112 | + | 237 | WP_001295499.1 | YebV family protein | - |
| I6K13_RS11420 | 2339217..2339396 | + | 180 | Protein_2262 | YebW family protein | - |
| I6K13_RS11425 | 2339405..2340061 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 2340158..2340426 | + | 269 | - | - | Antitoxin |
| - | 2340196..2340298 | - | 103 | - | - | Toxin |
| I6K13_RS11430 | 2340456..2340797 | - | 342 | WP_000976472.1 | YebY family protein | - |
| I6K13_RS11435 | 2340810..2341682 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| I6K13_RS11440 | 2341686..2342060 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6K13_RS11445 | 2342199..2342429 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K13_RS11450 | 2342531..2343187 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K13_RS11455 | 2343211..2343873 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193427 NZ_CP070162:c2340298-2340196 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT193427 NZ_CP070162:2340158-2340426 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
