Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4072746..4072891 | Replicon | chromosome |
| Accession | NZ_CP070158 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1310 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4072753..4072855 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4072746..4072891 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K40_RS19560 | 4068277..4069710 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K40_RS19565 | 4069826..4070065 | + | 240 | WP_002911393.1 | YebV family protein | - |
| I6K40_RS19570 | 4070163..4070354 | + | 192 | WP_002911395.1 | YebW family protein | - |
| I6K40_RS19575 | 4070351..4071004 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| I6K40_RS19580 | 4071161..4072129 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I6K40_RS19585 | 4072234..4072377 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4072746..4072891 | + | 146 | - | - | Antitoxin |
| - | 4072753..4072855 | - | 103 | - | - | Toxin |
| I6K40_RS19590 | 4073014..4073352 | - | 339 | WP_002911404.1 | YebY family protein | - |
| I6K40_RS19595 | 4073369..4074238 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| I6K40_RS19600 | 4074242..4074616 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6K40_RS19605 | 4074729..4074959 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K40_RS19610 | 4075038..4075697 | + | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| I6K40_RS19615 | 4075701..4077761 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193404 NZ_CP070158:c4072855-4072753 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT193404 NZ_CP070158:4072746-4072891 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
