Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 458096..458367 | Replicon | chromosome |
| Accession | NZ_CP070152 | ||
| Organism | Escherichia coli strain FDAARGOS_1285 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 458134..458237 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 458096..458367 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K15_RS02990 | 455253..456692 | + | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K15_RS02995 | 456810..457046 | + | 237 | WP_001295499.1 | YebV family protein | - |
| I6K15_RS03000 | 457151..457342 | + | 192 | WP_001296140.1 | YebW family protein | - |
| I6K15_RS03005 | 457343..457999 | - | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| - | 458096..458367 | + | 272 | - | - | Antitoxin |
| - | 458134..458237 | - | 104 | - | - | Toxin |
| I6K15_RS03010 | 458395..458736 | - | 342 | WP_000976472.1 | YebY family protein | - |
| I6K15_RS03015 | 458749..459621 | - | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| I6K15_RS03020 | 459625..459999 | - | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| I6K15_RS03025 | 460138..460368 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K15_RS03030 | 460470..461126 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K15_RS03035 | 461150..461812 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T193337 NZ_CP070152:c458237-458134 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT193337 NZ_CP070152:458096-458367 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
