Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2506041..2506309 | Replicon | chromosome |
| Accession | NZ_CP070148 | ||
| Organism | Escherichia coli strain FDAARGOS_1297 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2506079..2506181 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2506041..2506309 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K27_RS12200 | 2503198..2504637 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K27_RS12205 | 2504755..2504991 | + | 237 | WP_001295499.1 | YebV family protein | - |
| I6K27_RS12210 | 2505096..2505287 | + | 192 | WP_001296140.1 | YebW family protein | - |
| I6K27_RS12215 | 2505288..2505944 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 2506041..2506309 | + | 269 | - | - | Antitoxin |
| - | 2506079..2506181 | - | 103 | - | - | Toxin |
| I6K27_RS12220 | 2506339..2506680 | - | 342 | WP_000984819.1 | YebY family protein | - |
| I6K27_RS12225 | 2506693..2507565 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| I6K27_RS12230 | 2507569..2507943 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6K27_RS12235 | 2508082..2508312 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K27_RS12240 | 2508414..2509070 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K27_RS12245 | 2509093..2509755 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193321 NZ_CP070148:c2506181-2506079 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT193321 NZ_CP070148:2506041-2506309 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
