Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4904937..4905082 | Replicon | chromosome |
| Accession | NZ_CP070144 | ||
| Organism | Klebsiella oxytoca strain FDAARGOS_1331 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4904972..4905075 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4904937..4905082 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K61_RS22985 | 4900041..4902101 | + | 2061 | WP_016808307.1 | oligopeptidase B | - |
| I6K61_RS22990 | 4902108..4902767 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| I6K61_RS22995 | 4902846..4903076 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| I6K61_RS23000 | 4903212..4903586 | + | 375 | WP_004103348.1 | CopC domain-containing protein YobA | - |
| I6K61_RS23005 | 4903591..4904460 | + | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| I6K61_RS23010 | 4904477..4904815 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 4904937..4905082 | - | 146 | - | - | Antitoxin |
| - | 4904972..4905075 | + | 104 | - | - | Toxin |
| I6K61_RS23015 | 4905202..4906161 | - | 960 | WP_004113762.1 | spore coat U domain-containing protein | - |
| I6K61_RS23020 | 4906173..4908506 | - | 2334 | WP_049593002.1 | fimbrial biogenesis outer membrane usher protein | - |
| I6K61_RS23025 | 4908509..4909273 | - | 765 | WP_049593003.1 | molecular chaperone | - |
| I6K61_RS23030 | 4909291..4909809 | - | 519 | WP_023321220.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T193299 NZ_CP070144:4904972-4905075 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT193299 NZ_CP070144:c4905082-4904937 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
