Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3108181..3108449 | Replicon | chromosome |
| Accession | NZ_CP070124 | ||
| Organism | Escherichia coli strain FDAARGOS_1292 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3108309..3108411 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3108181..3108449 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K22_RS14715 | 3104735..3105397 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6K22_RS14720 | 3105420..3106076 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K22_RS14725 | 3106178..3106408 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K22_RS14730 | 3106547..3106921 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6K22_RS14735 | 3106925..3107797 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| I6K22_RS14740 | 3107810..3108151 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 3108181..3108449 | - | 269 | - | - | Antitoxin |
| - | 3108309..3108411 | + | 103 | - | - | Toxin |
| I6K22_RS14745 | 3108546..3109202 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| I6K22_RS14750 | 3109203..3109394 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I6K22_RS14755 | 3109499..3109735 | - | 237 | WP_001295499.1 | YebV family protein | - |
| I6K22_RS14760 | 3109853..3111292 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193235 NZ_CP070124:3108309-3108411 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT193235 NZ_CP070124:c3108449-3108181 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
