Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 28120..28265 | Replicon | chromosome |
| Accession | NZ_CP070105 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1314 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 28127..28229 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 28120..28265 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K44_RS00115 | 23653..25086 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K44_RS00120 | 25202..25441 | + | 240 | WP_002911393.1 | YebV family protein | - |
| I6K44_RS00125 | 25539..25730 | + | 192 | WP_002911395.1 | YebW family protein | - |
| I6K44_RS00130 | 25727..26380 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| I6K44_RS00135 | 26537..27505 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I6K44_RS00140 | 27610..27753 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 28120..28265 | + | 146 | - | - | Antitoxin |
| - | 28127..28229 | - | 103 | - | - | Toxin |
| I6K44_RS00145 | 28388..28726 | - | 339 | WP_002911404.1 | YebY family protein | - |
| I6K44_RS00150 | 28743..29612 | - | 870 | WP_064172307.1 | copper homeostasis membrane protein CopD | - |
| I6K44_RS00155 | 29616..29990 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6K44_RS00160 | 30103..30333 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K44_RS00165 | 30412..31071 | + | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| I6K44_RS00170 | 31075..33135 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193138 NZ_CP070105:c28229-28127 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT193138 NZ_CP070105:28120-28265 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
