Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4565862..4566007 | Replicon | chromosome |
| Accession | NZ_CP070092 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1316 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4565869..4565971 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4565862..4566007 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K46_RS22110 | 4561394..4562827 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K46_RS22115 | 4562943..4563182 | + | 240 | WP_002911393.1 | YebV family protein | - |
| I6K46_RS22120 | 4563280..4563471 | + | 192 | WP_002911395.1 | YebW family protein | - |
| I6K46_RS22125 | 4563468..4564121 | - | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| I6K46_RS22130 | 4564278..4565246 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| I6K46_RS22135 | 4565351..4565494 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4565862..4566007 | + | 146 | - | - | Antitoxin |
| - | 4565869..4565971 | - | 103 | - | - | Toxin |
| I6K46_RS22140 | 4566130..4566468 | - | 339 | WP_002911404.1 | YebY family protein | - |
| I6K46_RS22145 | 4566485..4567354 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| I6K46_RS22150 | 4567358..4567732 | - | 375 | WP_020316569.1 | CopC domain-containing protein YobA | - |
| I6K46_RS22155 | 4567845..4568075 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K46_RS22160 | 4568154..4568813 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I6K46_RS22165 | 4568817..4570877 | - | 2061 | WP_032419805.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193057 NZ_CP070092:c4565971-4565869 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT193057 NZ_CP070092:4565862-4566007 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
