Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 340932..341077 | Replicon | chromosome |
| Accession | NZ_CP070088 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1306 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 340968..341070 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 340932..341077 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K36_RS01625 | 336062..338122 | + | 2061 | WP_049000289.1 | oligopeptidase B | - |
| I6K36_RS01630 | 338126..338785 | - | 660 | WP_038431281.1 | exodeoxyribonuclease X | - |
| I6K36_RS01635 | 338864..339094 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K36_RS01640 | 339207..339581 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6K36_RS01645 | 339585..340454 | + | 870 | WP_057774489.1 | copper homeostasis membrane protein CopD | - |
| I6K36_RS01650 | 340471..340809 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 340932..341077 | - | 146 | - | - | Antitoxin |
| - | 340968..341070 | + | 103 | - | - | Toxin |
| I6K36_RS01655 | 341445..341588 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| I6K36_RS01660 | 341693..342661 | - | 969 | WP_072158545.1 | VirK/YbjX family protein | - |
| I6K36_RS01665 | 342818..343471 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| I6K36_RS01670 | 343468..343659 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I6K36_RS01675 | 343757..343996 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I6K36_RS01680 | 344112..345545 | - | 1434 | WP_040236949.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193028 NZ_CP070088:340968-341070 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT193028 NZ_CP070088:c341077-340932 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
