Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3798988..3799133 | Replicon | chromosome |
| Accession | NZ_CP070087 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1328 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3799024..3799126 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3798988..3799133 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K58_RS20325 | 3794118..3796178 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| I6K58_RS20330 | 3796182..3796841 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I6K58_RS20335 | 3796920..3797150 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K58_RS20340 | 3797263..3797637 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6K58_RS20345 | 3797641..3798510 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| I6K58_RS20350 | 3798527..3798865 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 3798988..3799133 | - | 146 | - | - | Antitoxin |
| - | 3799024..3799126 | + | 103 | - | - | Toxin |
| I6K58_RS20355 | 3799501..3799644 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| I6K58_RS20360 | 3799749..3800717 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I6K58_RS20365 | 3800874..3801527 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| I6K58_RS20370 | 3801524..3801715 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I6K58_RS20375 | 3801813..3802052 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I6K58_RS20380 | 3802168..3803601 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193018 NZ_CP070087:3799024-3799126 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT193018 NZ_CP070087:c3799133-3798988 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
