Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1021690..1021921 | Replicon | chromosome |
| Accession | NZ_CP070071 | ||
| Organism | Escherichia coli strain FDAARGOS_1287 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1021818..1021920 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1021690..1021921 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K17_RS05640 | 1018245..1018907 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6K17_RS05645 | 1018931..1019587 | - | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K17_RS05650 | 1019689..1019919 | - | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| I6K17_RS05655 | 1020058..1020432 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6K17_RS05660 | 1020436..1021296 | + | 861 | Protein_992 | copper homeostasis membrane protein CopD | - |
| I6K17_RS05665 | 1021319..1021660 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1021690..1021921 | - | 232 | - | - | Antitoxin |
| - | 1021818..1021920 | + | 103 | - | - | Toxin |
| I6K17_RS05670 | 1022052..1023128 | - | 1077 | WP_204608769.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| I6K17_RS05675 | 1023094..1023375 | - | 282 | WP_001311878.1 | excisionase | - |
| I6K17_RS05680 | 1023482..1023670 | - | 189 | WP_204608772.1 | DUF1187 family protein | - |
| - | 1023486..1023664 | + | 179 | NuclAT_0 | - | - |
| - | 1023486..1023664 | + | 179 | NuclAT_0 | - | - |
| - | 1023486..1023664 | + | 179 | NuclAT_0 | - | - |
| - | 1023486..1023664 | + | 179 | NuclAT_0 | - | - |
| I6K17_RS05685 | 1023663..1023857 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| I6K17_RS05690 | 1023914..1024723 | - | 810 | WP_000166317.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1016188..1081641 | 65453 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192932 NZ_CP070071:1021818-1021920 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 232 bp
>AT192932 NZ_CP070071:c1021921-1021690 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
