Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3057161..3057429 | Replicon | chromosome |
| Accession | NZ_CP070063 | ||
| Organism | Escherichia coli strain FDAARGOS_1372 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3057199..3057301 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3057161..3057429 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L02_RS14630 | 3054318..3055757 | + | 1440 | WP_001313925.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6L02_RS14635 | 3055875..3056111 | + | 237 | WP_001295499.1 | YebV family protein | - |
| I6L02_RS14640 | 3056216..3056407 | + | 192 | WP_001296140.1 | YebW family protein | - |
| I6L02_RS14645 | 3056408..3057064 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 3057161..3057429 | + | 269 | - | - | Antitoxin |
| - | 3057199..3057301 | - | 103 | - | - | Toxin |
| I6L02_RS14650 | 3057459..3057800 | - | 342 | WP_000976472.1 | YebY family protein | - |
| I6L02_RS14655 | 3057813..3058685 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| I6L02_RS14660 | 3058689..3059063 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6L02_RS14665 | 3059202..3059432 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6L02_RS14670 | 3059534..3060190 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6L02_RS14675 | 3060213..3060875 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192884 NZ_CP070063:c3057301-3057199 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT192884 NZ_CP070063:3057161-3057429 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
