Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1480831..1481102 | Replicon | chromosome |
| Accession | NZ_CP070048 | ||
| Organism | Escherichia coli strain FDAARGOS_1290 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1480869..1480972 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1480831..1481102 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K20_RS07460 | 1477988..1479427 | + | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K20_RS07465 | 1479545..1479781 | + | 237 | WP_001295499.1 | YebV family protein | - |
| I6K20_RS07470 | 1479886..1480077 | + | 192 | WP_001296140.1 | YebW family protein | - |
| I6K20_RS07475 | 1480078..1480734 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 1480831..1481102 | + | 272 | - | - | Antitoxin |
| - | 1480869..1480972 | - | 104 | - | - | Toxin |
| I6K20_RS07480 | 1481130..1481471 | - | 342 | WP_000976481.1 | YebY family protein | - |
| I6K20_RS07485 | 1481484..1482356 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| I6K20_RS07490 | 1482360..1482734 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| I6K20_RS07495 | 1482873..1483103 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K20_RS07500 | 1483205..1483861 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K20_RS07505 | 1483885..1484547 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1464281..1488412 | 24131 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T192832 NZ_CP070048:c1480972-1480869 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT192832 NZ_CP070048:1480831-1481102 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
