Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 325870..326015 | Replicon | chromosome |
| Accession | NZ_CP070046 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1319 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 325877..325979 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 325870..326015 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K49_RS01605 | 321401..322834 | + | 1434 | WP_065811950.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K49_RS01610 | 322950..323189 | + | 240 | WP_002911393.1 | YebV family protein | - |
| I6K49_RS01615 | 323287..323478 | + | 192 | WP_002911395.1 | YebW family protein | - |
| I6K49_RS01620 | 323475..324128 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| I6K49_RS01625 | 324285..325253 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I6K49_RS01630 | 325358..325501 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 325870..326015 | + | 146 | - | - | Antitoxin |
| - | 325877..325979 | - | 103 | - | - | Toxin |
| I6K49_RS01635 | 326138..326476 | - | 339 | WP_002911404.1 | YebY family protein | - |
| I6K49_RS01640 | 326493..327362 | - | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| I6K49_RS01645 | 327366..327740 | - | 375 | WP_048279882.1 | CopC domain-containing protein YobA | - |
| I6K49_RS01650 | 327853..328083 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K49_RS01655 | 328162..328821 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I6K49_RS01660 | 328825..330885 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192802 NZ_CP070046:c325979-325877 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT192802 NZ_CP070046:325870-326015 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
