Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1972150..1972418 | Replicon | chromosome |
| Accession | NZ_CP070045 | ||
| Organism | Escherichia coli strain FDAARGOS_1303 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1972188..1972290 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1972150..1972418 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K33_RS10440 | 1969307..1970746 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K33_RS10445 | 1970864..1971100 | + | 237 | WP_001295499.1 | YebV family protein | - |
| I6K33_RS10450 | 1971205..1971396 | + | 192 | WP_001296140.1 | YebW family protein | - |
| I6K33_RS10455 | 1971397..1972053 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 1972150..1972418 | + | 269 | - | - | Antitoxin |
| - | 1972188..1972290 | - | 103 | - | - | Toxin |
| I6K33_RS10460 | 1972448..1972789 | - | 342 | WP_000984819.1 | YebY family protein | - |
| I6K33_RS10465 | 1972802..1973674 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| I6K33_RS10470 | 1973678..1974052 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6K33_RS10475 | 1974191..1974421 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K33_RS10480 | 1974523..1975179 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K33_RS10485 | 1975202..1975864 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192785 NZ_CP070045:c1972290-1972188 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT192785 NZ_CP070045:1972150-1972418 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
