Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 424795..425063 | Replicon | chromosome |
| Accession | NZ_CP070041 | ||
| Organism | Escherichia coli strain FDAARGOS_1293 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 424923..425025 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 424795..425063 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K23_RS01945 | 420094..420756 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6K23_RS01950 | 420780..421436 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K23_RS01955 | 421539..421769 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K23_RS01960 | 422016..423185 | + | 1170 | Protein_384 | IS3-like element ISEc52 family transposase | - |
| I6K23_RS01965 | 423179..423535 | + | 357 | WP_204628207.1 | CopC domain-containing protein YobA | - |
| I6K23_RS01970 | 423539..424411 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| I6K23_RS01975 | 424424..424765 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 424795..425063 | - | 269 | - | - | Antitoxin |
| - | 424923..425025 | + | 103 | - | - | Toxin |
| I6K23_RS01980 | 425160..425816 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| I6K23_RS01985 | 425817..426008 | - | 192 | WP_001317886.1 | YebW family protein | - |
| I6K23_RS01990 | 426113..426349 | - | 237 | WP_001295499.1 | YebV family protein | - |
| I6K23_RS01995 | 426467..427906 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 418037..440903 | 22866 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192743 NZ_CP070041:424923-425025 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT192743 NZ_CP070041:c425063-424795 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
