Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4882608..4882753 | Replicon | chromosome |
| Accession | NZ_CP070037 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1322 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4882644..4882746 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4882608..4882753 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K52_RS23680 | 4877738..4879798 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| I6K52_RS23685 | 4879802..4880461 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I6K52_RS23690 | 4880540..4880770 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K52_RS23695 | 4880883..4881257 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6K52_RS23700 | 4881261..4882130 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| I6K52_RS23705 | 4882147..4882485 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4882608..4882753 | - | 146 | - | - | Antitoxin |
| - | 4882644..4882746 | + | 103 | - | - | Toxin |
| I6K52_RS23710 | 4883121..4883264 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| I6K52_RS23715 | 4883369..4884337 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| I6K52_RS23720 | 4884494..4885147 | + | 654 | WP_020804905.1 | protein-serine/threonine phosphatase | - |
| I6K52_RS23725 | 4885144..4885335 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I6K52_RS23730 | 4885433..4885672 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I6K52_RS23735 | 4885788..4887221 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192731 NZ_CP070037:4882644-4882746 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT192731 NZ_CP070037:c4882753-4882608 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
