Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3732716..3732987 | Replicon | chromosome |
| Accession | NZ_CP070026 | ||
| Organism | Escherichia coli strain FDAARGOS_1337 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3732754..3732857 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3732716..3732987 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K67_RS18180 | 3729873..3731312 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K67_RS18185 | 3731430..3731666 | + | 237 | WP_001295499.1 | YebV family protein | - |
| I6K67_RS18190 | 3731771..3731962 | + | 192 | WP_204691691.1 | YebW family protein | - |
| I6K67_RS18195 | 3731963..3732619 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3732716..3732987 | + | 272 | - | - | Antitoxin |
| - | 3732754..3732857 | - | 104 | - | - | Toxin |
| I6K67_RS18200 | 3733015..3733356 | - | 342 | WP_000976476.1 | YebY family protein | - |
| I6K67_RS18205 | 3733369..3734241 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| I6K67_RS18210 | 3734245..3734619 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6K67_RS18215 | 3734758..3734988 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K67_RS18220 | 3735090..3735746 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K67_RS18225 | 3735770..3736432 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T192709 NZ_CP070026:c3732857-3732754 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT192709 NZ_CP070026:3732716-3732987 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
