Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3458773..3458918 | Replicon | chromosome |
| Accession | NZ_CP070020 | ||
| Organism | Klebsiella oxytoca strain FDAARGOS_1333 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3458780..3458883 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3458773..3458918 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K63_RS16005 | 3454046..3454564 | + | 519 | WP_032692328.1 | spore coat U domain-containing protein | - |
| I6K63_RS16010 | 3454582..3455346 | + | 765 | WP_004113760.1 | molecular chaperone | - |
| I6K63_RS16015 | 3455349..3457682 | + | 2334 | WP_004103340.1 | fimbrial biogenesis outer membrane usher protein | - |
| I6K63_RS16020 | 3457694..3458653 | + | 960 | WP_004113762.1 | spore coat U domain-containing protein | - |
| - | 3458773..3458918 | + | 146 | - | - | Antitoxin |
| - | 3458780..3458883 | - | 104 | - | - | Toxin |
| I6K63_RS16025 | 3459040..3459378 | - | 339 | WP_004103344.1 | YebY family protein | - |
| I6K63_RS16030 | 3459395..3460264 | - | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| I6K63_RS16035 | 3460269..3460643 | - | 375 | WP_004103348.1 | CopC domain-containing protein YobA | - |
| I6K63_RS16040 | 3460779..3461009 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| I6K63_RS16045 | 3461088..3461747 | + | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| I6K63_RS16050 | 3461754..3463814 | - | 2061 | WP_016808307.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T192682 NZ_CP070020:c3458883-3458780 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT192682 NZ_CP070020:3458773-3458918 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
