Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 34140..34285 | Replicon | chromosome |
| Accession | NZ_CP070015 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1309 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 34147..34249 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 34140..34285 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K39_RS00145 | 29671..31104 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K39_RS00150 | 31220..31459 | + | 240 | WP_002911393.1 | YebV family protein | - |
| I6K39_RS00155 | 31557..31748 | + | 192 | WP_002911395.1 | YebW family protein | - |
| I6K39_RS00160 | 31745..32398 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| I6K39_RS00165 | 32555..33523 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I6K39_RS00170 | 33628..33771 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 34140..34285 | + | 146 | - | - | Antitoxin |
| - | 34147..34249 | - | 103 | - | - | Toxin |
| I6K39_RS00175 | 34408..34746 | - | 339 | WP_002911404.1 | YebY family protein | - |
| I6K39_RS00180 | 34763..35632 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| I6K39_RS00185 | 35636..36010 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6K39_RS00190 | 36123..36353 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K39_RS00195 | 36432..37091 | + | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| I6K39_RS00200 | 37095..39155 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192660 NZ_CP070015:c34249-34147 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT192660 NZ_CP070015:34140-34285 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
