Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4035460..4035731 | Replicon | chromosome |
| Accession | NZ_CP070007 | ||
| Organism | Escherichia coli strain FDAARGOS_1288 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4035590..4035693 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4035460..4035731 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K18_RS19295 | 4032015..4032677 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6K18_RS19300 | 4032701..4033357 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K18_RS19305 | 4033459..4033689 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K18_RS19310 | 4033828..4034202 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| I6K18_RS19315 | 4034206..4035078 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| I6K18_RS19320 | 4035091..4035432 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 4035460..4035731 | - | 272 | - | - | Antitoxin |
| - | 4035590..4035693 | + | 104 | - | - | Toxin |
| I6K18_RS19325 | 4035828..4036484 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| I6K18_RS19330 | 4036485..4036676 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I6K18_RS19335 | 4036781..4037017 | - | 237 | WP_001295499.1 | YebV family protein | - |
| I6K18_RS19340 | 4037135..4038574 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T192631 NZ_CP070007:4035590-4035693 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT192631 NZ_CP070007:c4035731-4035460 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
