Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4476409..4476677 | Replicon | chromosome |
| Accession | NZ_CP069996 | ||
| Organism | Escherichia coli strain FDAARGOS_1300 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4476537..4476639 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4476409..4476677 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K30_RS21720 | 4472963..4473625 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6K30_RS21725 | 4473648..4474304 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K30_RS21730 | 4474406..4474636 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K30_RS21735 | 4474775..4475149 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6K30_RS21740 | 4475153..4476025 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| I6K30_RS21745 | 4476038..4476379 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 4476409..4476677 | - | 269 | - | - | Antitoxin |
| - | 4476537..4476639 | + | 103 | - | - | Toxin |
| I6K30_RS21750 | 4476774..4477430 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| I6K30_RS21755 | 4477431..4477622 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I6K30_RS21760 | 4477727..4477963 | - | 237 | WP_001295499.1 | YebV family protein | - |
| I6K30_RS21765 | 4478081..4479520 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192602 NZ_CP069996:4476537-4476639 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT192602 NZ_CP069996:c4476677-4476409 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
