Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2342636..2342781 | Replicon | chromosome |
| Accession | NZ_CP069992 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1329 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2342643..2342745 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2342636..2342781 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K59_RS11550 | 2338168..2339601 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K59_RS11555 | 2339717..2339956 | + | 240 | WP_002911393.1 | YebV family protein | - |
| I6K59_RS11560 | 2340054..2340245 | + | 192 | WP_002911395.1 | YebW family protein | - |
| I6K59_RS11565 | 2340242..2340895 | - | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| I6K59_RS11570 | 2341052..2342020 | + | 969 | WP_162472361.1 | VirK/YbjX family protein | - |
| I6K59_RS11575 | 2342125..2342268 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2342636..2342781 | + | 146 | - | - | Antitoxin |
| - | 2342643..2342745 | - | 103 | - | - | Toxin |
| I6K59_RS11580 | 2342904..2343242 | - | 339 | WP_002911404.1 | YebY family protein | - |
| I6K59_RS11585 | 2343259..2344128 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| I6K59_RS11590 | 2344132..2344506 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6K59_RS11595 | 2344619..2344849 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K59_RS11600 | 2344928..2345587 | + | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| I6K59_RS11605 | 2345591..2347651 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192542 NZ_CP069992:c2342745-2342643 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT192542 NZ_CP069992:2342636-2342781 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
