Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1002482..1002750 | Replicon | chromosome |
| Accession | NZ_CP069990 | ||
| Organism | Escherichia coli strain FDAARGOS_1304 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1002610..1002712 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1002482..1002750 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K34_RS04770 | 999036..999698 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6K34_RS04775 | 999721..1000377 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K34_RS04780 | 1000479..1000709 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K34_RS04785 | 1000848..1001222 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6K34_RS04790 | 1001226..1002098 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| I6K34_RS04795 | 1002111..1002452 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 1002482..1002750 | - | 269 | - | - | Antitoxin |
| - | 1002610..1002712 | + | 103 | - | - | Toxin |
| I6K34_RS04800 | 1002847..1003503 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| I6K34_RS04805 | 1003504..1003695 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I6K34_RS04810 | 1003800..1004036 | - | 237 | WP_001295499.1 | YebV family protein | - |
| I6K34_RS04815 | 1004154..1005593 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192507 NZ_CP069990:1002610-1002712 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT192507 NZ_CP069990:c1002750-1002482 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
