Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4887613..4887884 | Replicon | chromosome |
| Accession | NZ_CP069980 | ||
| Organism | Escherichia coli strain FDAARGOS_1291 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4887651..4887754 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4887613..4887884 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K21_RS23285 | 4884770..4886209 | + | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K21_RS23290 | 4886327..4886563 | + | 237 | WP_001295499.1 | YebV family protein | - |
| I6K21_RS23295 | 4886668..4886859 | + | 192 | WP_001296140.1 | YebW family protein | - |
| I6K21_RS23300 | 4886860..4887516 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 4887613..4887884 | + | 272 | - | - | Antitoxin |
| - | 4887651..4887754 | - | 104 | - | - | Toxin |
| I6K21_RS23305 | 4887912..4888253 | - | 342 | WP_000976481.1 | YebY family protein | - |
| I6K21_RS23310 | 4888266..4889138 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| I6K21_RS23315 | 4889142..4889516 | - | 375 | WP_204652614.1 | CopC domain-containing protein YobA | - |
| I6K21_RS23320 | 4889655..4889885 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K21_RS23325 | 4889987..4890643 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K21_RS23330 | 4890667..4891329 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4879383..4895194 | 15811 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T192487 NZ_CP069980:c4887754-4887651 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT192487 NZ_CP069980:4887613-4887884 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
