Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 548266..548411 | Replicon | chromosome |
| Accession | NZ_CP069968 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1308 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 548302..548404 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 548266..548411 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K38_RS02900 | 543396..545456 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| I6K38_RS02905 | 545460..546119 | - | 660 | WP_004180433.1 | exodeoxyribonuclease X | - |
| I6K38_RS02910 | 546198..546428 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K38_RS02915 | 546541..546915 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6K38_RS02920 | 546919..547788 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| I6K38_RS02925 | 547805..548143 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 548266..548411 | - | 146 | - | - | Antitoxin |
| - | 548302..548404 | + | 103 | - | - | Toxin |
| I6K38_RS02930 | 548780..548923 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| I6K38_RS02935 | 549028..549996 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I6K38_RS02940 | 550153..550806 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| I6K38_RS02945 | 550803..550994 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I6K38_RS02950 | 551092..551331 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I6K38_RS02955 | 551447..552880 | - | 1434 | WP_069345678.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192362 NZ_CP069968:548302-548404 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT192362 NZ_CP069968:c548411-548266 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
