Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1459080..1459225 | Replicon | chromosome |
| Accession | NZ_CP069962 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1307 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1459116..1459218 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1459080..1459225 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K37_RS07180 | 1454210..1456270 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| I6K37_RS07185 | 1456274..1456933 | - | 660 | WP_004180433.1 | exodeoxyribonuclease X | - |
| I6K37_RS07190 | 1457012..1457242 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K37_RS07195 | 1457355..1457729 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6K37_RS07200 | 1457733..1458602 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| I6K37_RS07205 | 1458619..1458957 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1459080..1459225 | - | 146 | - | - | Antitoxin |
| - | 1459116..1459218 | + | 103 | - | - | Toxin |
| I6K37_RS07210 | 1459594..1459737 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| I6K37_RS07215 | 1459842..1460810 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I6K37_RS07220 | 1460967..1461620 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| I6K37_RS07225 | 1461617..1461808 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I6K37_RS07230 | 1461906..1462145 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I6K37_RS07235 | 1462261..1463694 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192341 NZ_CP069962:1459116-1459218 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT192341 NZ_CP069962:c1459225-1459080 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
