Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 320605..320876 | Replicon | chromosome |
| Accession | NZ_CP069957 | ||
| Organism | Escherichia coli strain FDAARGOS_1279 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 320735..320838 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 320605..320876 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K09_RS01510 | 317164..317826 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6K09_RS01515 | 317850..318506 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K09_RS01520 | 318608..318838 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K09_RS01525 | 318977..319351 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| I6K09_RS01530 | 319355..320227 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| I6K09_RS01535 | 320240..320581 | + | 342 | WP_001520705.1 | YebY family protein | - |
| - | 320605..320876 | - | 272 | - | - | Antitoxin |
| - | 320735..320838 | + | 104 | - | - | Toxin |
| I6K09_RS01540 | 320973..321629 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| I6K09_RS01545 | 321630..321821 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I6K09_RS01550 | 321926..322162 | - | 237 | WP_001295499.1 | YebV family protein | - |
| I6K09_RS01555 | 322280..323719 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T192281 NZ_CP069957:320735-320838 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT192281 NZ_CP069957:c320876-320605 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
