Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1537469..1537614 | Replicon | chromosome |
| Accession | NZ_CP069946 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1325 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1537476..1537578 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1537469..1537614 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K55_RS07635 | 1533000..1534433 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K55_RS07640 | 1534549..1534788 | + | 240 | WP_002911393.1 | YebV family protein | - |
| I6K55_RS07645 | 1534886..1535077 | + | 192 | WP_002911395.1 | YebW family protein | - |
| I6K55_RS07650 | 1535074..1535727 | - | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| I6K55_RS07655 | 1535884..1536852 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| I6K55_RS07660 | 1536957..1537100 | + | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| - | 1537469..1537614 | + | 146 | - | - | Antitoxin |
| - | 1537476..1537578 | - | 103 | - | - | Toxin |
| I6K55_RS07665 | 1537737..1538075 | - | 339 | WP_002911404.1 | YebY family protein | - |
| I6K55_RS07670 | 1538092..1538961 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| I6K55_RS07675 | 1538965..1539339 | - | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| I6K55_RS07680 | 1539452..1539682 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K55_RS07685 | 1539761..1540420 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I6K55_RS07690 | 1540424..1542484 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192252 NZ_CP069946:c1537578-1537476 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT192252 NZ_CP069946:1537469-1537614 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
