Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2666255..2666523 | Replicon | chromosome |
| Accession | NZ_CP069945 | ||
| Organism | Escherichia coli strain FDAARGOS_1373 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2666293..2666395 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2666255..2666523 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L03_RS12605 | 2663412..2664851 | + | 1440 | WP_024210966.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6L03_RS12610 | 2664969..2665205 | + | 237 | WP_001295499.1 | YebV family protein | - |
| I6L03_RS12615 | 2665310..2665501 | + | 192 | WP_001317886.1 | YebW family protein | - |
| I6L03_RS12620 | 2665502..2666158 | - | 657 | WP_001357783.1 | protein-serine/threonine phosphatase | - |
| - | 2666255..2666523 | + | 269 | - | - | Antitoxin |
| - | 2666293..2666395 | - | 103 | - | - | Toxin |
| I6L03_RS12625 | 2666553..2666894 | - | 342 | WP_001764586.1 | YebY family protein | - |
| I6L03_RS12630 | 2666907..2667779 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| I6L03_RS12635 | 2667783..2668157 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6L03_RS12640 | 2668296..2668526 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6L03_RS12645 | 2668628..2669284 | + | 657 | WP_000011646.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6L03_RS12650 | 2669308..2669970 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192233 NZ_CP069945:c2666395-2666293 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT192233 NZ_CP069945:2666255-2666523 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
