Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3256263..3256408 | Replicon | chromosome |
| Accession | NZ_CP069943 | ||
| Organism | Klebsiella oxytoca strain FDAARGOS_1332 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3256298..3256401 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3256263..3256408 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K62_RS15275 | 3251367..3253427 | + | 2061 | WP_016808307.1 | oligopeptidase B | - |
| I6K62_RS15280 | 3253434..3254093 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| I6K62_RS15285 | 3254172..3254402 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| I6K62_RS15290 | 3254538..3254912 | + | 375 | WP_004103348.1 | CopC domain-containing protein YobA | - |
| I6K62_RS15295 | 3254917..3255786 | + | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| I6K62_RS15300 | 3255803..3256141 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 3256263..3256408 | - | 146 | - | - | Antitoxin |
| - | 3256298..3256401 | + | 104 | - | - | Toxin |
| I6K62_RS15305 | 3256528..3257487 | - | 960 | WP_004113762.1 | spore coat U domain-containing protein | - |
| I6K62_RS15310 | 3257499..3259832 | - | 2334 | WP_049593002.1 | fimbrial biogenesis outer membrane usher protein | - |
| I6K62_RS15315 | 3259835..3260599 | - | 765 | WP_049593003.1 | molecular chaperone | - |
| I6K62_RS15320 | 3260617..3261135 | - | 519 | WP_023321220.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T192210 NZ_CP069943:3256298-3256401 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT192210 NZ_CP069943:c3256408-3256263 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
