Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 456238..456383 | Replicon | chromosome |
| Accession | NZ_CP069940 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1312 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 456245..456347 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 456238..456383 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K42_RS02285 | 451770..453203 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K42_RS02290 | 453319..453558 | + | 240 | WP_002911393.1 | YebV family protein | - |
| I6K42_RS02295 | 453656..453847 | + | 192 | WP_002911395.1 | YebW family protein | - |
| I6K42_RS02300 | 453844..454497 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| I6K42_RS02305 | 454654..455622 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| I6K42_RS02310 | 455727..455870 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 456238..456383 | + | 146 | - | - | Antitoxin |
| - | 456245..456347 | - | 103 | - | - | Toxin |
| I6K42_RS02315 | 456506..456844 | - | 339 | WP_002911404.1 | YebY family protein | - |
| I6K42_RS02320 | 456861..457730 | - | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| I6K42_RS02325 | 457734..458108 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6K42_RS02330 | 458221..458451 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K42_RS02335 | 458530..459189 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I6K42_RS02340 | 459193..461253 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192188 NZ_CP069940:c456347-456245 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT192188 NZ_CP069940:456238-456383 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
