Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1877648..1877793 | Replicon | chromosome |
| Accession | NZ_CP069907 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1313 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1877655..1877757 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1877648..1877793 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K43_RS12255 | 1873179..1874612 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K43_RS12260 | 1874728..1874967 | + | 240 | WP_002911393.1 | YebV family protein | - |
| I6K43_RS12265 | 1875065..1875256 | + | 192 | WP_002911395.1 | YebW family protein | - |
| I6K43_RS12270 | 1875253..1875906 | - | 654 | WP_048982385.1 | protein-serine/threonine phosphatase | - |
| I6K43_RS12275 | 1876063..1877031 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I6K43_RS12280 | 1877136..1877279 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1877648..1877793 | + | 146 | - | - | Antitoxin |
| - | 1877655..1877757 | - | 103 | - | - | Toxin |
| I6K43_RS12285 | 1877916..1878254 | - | 339 | WP_048982383.1 | YebY family protein | - |
| I6K43_RS12290 | 1878271..1879140 | - | 870 | WP_023285313.1 | copper homeostasis membrane protein CopD | - |
| I6K43_RS12295 | 1879144..1879518 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6K43_RS12300 | 1879631..1879861 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K43_RS12305 | 1879940..1880599 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I6K43_RS12310 | 1880603..1882663 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192112 NZ_CP069907:c1877757-1877655 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT192112 NZ_CP069907:1877648-1877793 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
