Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 304085..304353 | Replicon | chromosome |
| Accession | NZ_CP069893 | ||
| Organism | Escherichia coli strain FDAARGOS_1286 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 304123..304225 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 304085..304353 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K16_RS01550 | 301242..302681 | + | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K16_RS01555 | 302799..303035 | + | 237 | WP_001295499.1 | YebV family protein | - |
| I6K16_RS01560 | 303140..303331 | + | 192 | WP_001317886.1 | YebW family protein | - |
| I6K16_RS01565 | 303332..303988 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 304085..304353 | + | 269 | - | - | Antitoxin |
| - | 304123..304225 | - | 103 | - | - | Toxin |
| I6K16_RS01570 | 304383..304724 | - | 342 | WP_000976472.1 | YebY family protein | - |
| I6K16_RS01575 | 304737..305609 | - | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| I6K16_RS01580 | 305613..305987 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6K16_RS01585 | 306126..306356 | + | 231 | WP_204669751.1 | DNA polymerase III subunit theta | - |
| I6K16_RS01590 | 306458..307114 | + | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K16_RS01595 | 307138..307800 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192064 NZ_CP069893:c304225-304123 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT192064 NZ_CP069893:304085-304353 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
