Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4604017..4604285 | Replicon | chromosome |
| Accession | NZ_CP069890 | ||
| Organism | Escherichia coli strain FDAARGOS_1295 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4604055..4604157 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4604017..4604285 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K25_RS22275 | 4601174..4602613 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K25_RS22280 | 4602731..4602967 | + | 237 | WP_001295499.1 | YebV family protein | - |
| I6K25_RS22285 | 4603072..4603263 | + | 192 | WP_001296140.1 | YebW family protein | - |
| I6K25_RS22290 | 4603264..4603920 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 4604017..4604285 | + | 269 | - | - | Antitoxin |
| - | 4604055..4604157 | - | 103 | - | - | Toxin |
| I6K25_RS22295 | 4604315..4604656 | - | 342 | WP_000984819.1 | YebY family protein | - |
| I6K25_RS22300 | 4604669..4605541 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| I6K25_RS22305 | 4605545..4605919 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6K25_RS22310 | 4606058..4606288 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K25_RS22315 | 4606390..4607046 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K25_RS22320 | 4607069..4607731 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T192052 NZ_CP069890:c4604157-4604055 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT192052 NZ_CP069890:4604017-4604285 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
