Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4960792..4960937 | Replicon | chromosome |
| Accession | NZ_CP069873 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1323 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4960799..4960901 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4960792..4960937 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K53_RS23890 | 4956324..4957757 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6K53_RS23895 | 4957873..4958112 | + | 240 | WP_002911393.1 | YebV family protein | - |
| I6K53_RS23900 | 4958210..4958401 | + | 192 | WP_002911395.1 | YebW family protein | - |
| I6K53_RS23905 | 4958398..4959051 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| I6K53_RS23910 | 4959208..4960176 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I6K53_RS23915 | 4960281..4960424 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4960792..4960937 | + | 146 | - | - | Antitoxin |
| - | 4960799..4960901 | - | 103 | - | - | Toxin |
| I6K53_RS23920 | 4961060..4961398 | - | 339 | WP_002911404.1 | YebY family protein | - |
| I6K53_RS23925 | 4961415..4962284 | - | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| I6K53_RS23930 | 4962288..4962662 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6K53_RS23935 | 4962775..4963005 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K53_RS23940 | 4963084..4963743 | + | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| I6K53_RS23945 | 4963747..4965807 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T191990 NZ_CP069873:c4960901-4960799 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT191990 NZ_CP069873:4960792-4960937 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
