Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2795148..2795293 | Replicon | chromosome |
| Accession | NZ_CP069853 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1324 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2795184..2795286 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2795148..2795293 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K54_RS13565 | 2790278..2792338 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| I6K54_RS13570 | 2792342..2793001 | - | 660 | WP_204727261.1 | exodeoxyribonuclease X | - |
| I6K54_RS13575 | 2793080..2793310 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K54_RS13580 | 2793423..2793797 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6K54_RS13585 | 2793801..2794670 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| I6K54_RS13590 | 2794687..2795025 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2795148..2795293 | - | 146 | - | - | Antitoxin |
| - | 2795184..2795286 | + | 103 | - | - | Toxin |
| I6K54_RS13595 | 2795661..2795804 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| I6K54_RS13600 | 2795909..2796877 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I6K54_RS13605 | 2797034..2797687 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| I6K54_RS13610 | 2797684..2797875 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I6K54_RS13615 | 2797973..2798212 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I6K54_RS13620 | 2798328..2799761 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T191911 NZ_CP069853:2795184-2795286 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT191911 NZ_CP069853:c2795293-2795148 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
