Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 58935..59080 | Replicon | chromosome |
| Accession | NZ_CP069847 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1305 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 58971..59073 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 58935..59080 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K35_RS02310 | 54065..56125 | + | 2061 | WP_032420218.1 | oligopeptidase B | - |
| I6K35_RS02315 | 56129..56788 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I6K35_RS02320 | 56867..57097 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K35_RS02325 | 57210..57584 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6K35_RS02330 | 57588..58457 | + | 870 | WP_032420215.1 | copper homeostasis membrane protein CopD | - |
| I6K35_RS02335 | 58474..58812 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 58935..59080 | - | 146 | - | - | Antitoxin |
| - | 58971..59073 | + | 103 | - | - | Toxin |
| I6K35_RS02340 | 59448..59591 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| I6K35_RS02345 | 59696..60664 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I6K35_RS02350 | 60821..61474 | + | 654 | WP_016529030.1 | protein-serine/threonine phosphatase | - |
| I6K35_RS02355 | 61471..61662 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I6K35_RS02360 | 61760..61999 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I6K35_RS02365 | 62115..63548 | - | 1434 | WP_064149175.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T191883 NZ_CP069847:58971-59073 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT191883 NZ_CP069847:c59080-58935 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
