Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2145259..2145425 | Replicon | chromosome |
| Accession | NZ_CP069815 | ||
| Organism | Raoultella planticola strain HH15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2145317..2145420 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2145259..2145425 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G9395_RS10175 | 2140397..2142457 | + | 2061 | WP_032686936.1 | oligopeptidase B | - |
| G9395_RS10180 | 2142463..2143122 | - | 660 | WP_205343279.1 | exodeoxyribonuclease X | - |
| G9395_RS10185 | 2143201..2143431 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| G9395_RS10190 | 2143558..2143932 | + | 375 | WP_032695279.1 | CopC domain-containing protein YobA | - |
| G9395_RS10195 | 2143936..2144805 | + | 870 | WP_165634082.1 | copper homeostasis membrane protein CopD | - |
| G9395_RS10200 | 2144822..2145160 | + | 339 | WP_032686940.1 | YebY family protein | - |
| - | 2145259..2145425 | - | 167 | - | - | Antitoxin |
| - | 2145317..2145420 | + | 104 | - | - | Toxin |
| G9395_RS10205 | 2145739..2145882 | - | 144 | WP_142131748.1 | Ecr family regulatory small membrane protein | - |
| G9395_RS10210 | 2146003..2146974 | - | 972 | WP_180889110.1 | VirK/YbjX family protein | - |
| G9395_RS10215 | 2147117..2147761 | + | 645 | WP_136894840.1 | protein-serine/threonine phosphatase | - |
| G9395_RS10220 | 2147767..2147958 | - | 192 | WP_032686984.1 | YebW family protein | - |
| G9395_RS10225 | 2148052..2148291 | - | 240 | WP_004863958.1 | YebV family protein | - |
| G9395_RS10230 | 2148406..2149839 | - | 1434 | WP_165634083.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T191839 NZ_CP069815:2145317-2145420 [Raoultella planticola]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT191839 NZ_CP069815:c2145425-2145259 [Raoultella planticola]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
