Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 2367403..2367931 Replicon chromosome
Accession NZ_CP069798
Organism Paralysiella testudinis strain 26B

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag JQU52_RS12110 Protein ID WP_230338735.1
Coordinates 2367403..2367699 (-) Length 99 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag JQU52_RS12115 Protein ID WP_230338736.1
Coordinates 2367689..2367931 (-) Length 81 a.a.

Genomic Context

JQU52_RS12100JQU52_RS12105JQU52_RS12125JQU52_RS12130JQU52_RS12135JQU52_RS12145JQU52_RS12090JQU52_RS12095JQU52_RS12110JQU52_RS12115JQU52_RS12120JQU52_RS12140JQU52_RS12150JQU52_RS12155
Location: 2365641..2366591 (951 bp)
Type: Others
Protein ID: WP_230340580.1
Location: 2366607..2367131 (525 bp)
Type: Others
Protein ID: WP_230338734.1
Location: 2368673..2369437 (765 bp)
Type: Others
Protein ID: WP_230338738.1
Location: 2369434..2369505 (72 bp)
Type: Others
Protein ID: Protein_2368
Location: 2369568..2369789 (222 bp)
Type: Others
Protein ID: WP_230338739.1
Location: 2370613..2371002 (390 bp)
Type: Others
Protein ID: WP_230338741.1
Location: 2362908..2363900 (993 bp)
Type: Others
Protein ID: WP_268866616.1
Location: 2363919..2364809 (891 bp)
Type: Others
Protein ID: WP_230338733.1
Location: 2367403..2367699 (297 bp)
Type: Toxin
Protein ID: WP_230338735.1
Location: 2367689..2367931 (243 bp)
Type: Antitoxin
Protein ID: WP_230338736.1
Location: 2367997..2368713 (717 bp)
Type: Others
Protein ID: WP_230338737.1
Location: 2369784..2370548 (765 bp)
Type: Others
Protein ID: WP_230338740.1
Location: 2371144..2371809 (666 bp)
Type: Others
Protein ID: WP_230338742.1
Location: 2371806..2372480 (675 bp)
Type: Others
Protein ID: WP_230338743.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
JQU52_RS12090 (JQU52_12095)2362908..2363900-993WP_268866616.1CDF family Co(II)/Ni(II) efflux transporter DmeF-
JQU52_RS12095 (JQU52_12100)2363919..2364809-891WP_230338733.1NAD(+) kinase-
JQU52_RS12100 (JQU52_12105)2365641..2366591+951WP_230340580.1tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA-
JQU52_RS12105 (JQU52_12110)2366607..2367131+525WP_230338734.1RDD family protein-
JQU52_RS12110 (JQU52_12115)2367403..2367699-297WP_230338735.1type II toxin-antitoxin system RelE/ParE family toxinToxin
JQU52_RS12115 (JQU52_12120)2367689..2367931-243WP_230338736.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
JQU52_RS12120 (JQU52_12125)2367997..2368713-717WP_230338737.1hypothetical protein-
JQU52_RS12125 (JQU52_12130)2368673..2369437+765WP_230338738.1hypothetical protein-
JQU52_RS12130 (JQU52_12135)2369434..2369505+72Protein_2368single-stranded DNA-binding protein-
JQU52_RS12135 (JQU52_12140)2369568..2369789+222WP_230338739.1hypothetical protein-
JQU52_RS12140 (JQU52_12145)2369784..2370548-765WP_230338740.1IS5 family transposase-
JQU52_RS12145 (JQU52_12150)2370613..2371002+390WP_230338741.1tyrosine-type recombinase/integrase-
JQU52_RS12150 (JQU52_12155)2371144..2371809-666WP_230338742.1HAD family hydrolase-
JQU52_RS12155 (JQU52_12160)2371806..2372480-675WP_230338743.1DnaA regulatory inactivator Hda-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(10-67)


Sequences

Toxin        


Download         Length: 99 a.a.        Molecular weight: 11054.95 Da        Isoelectric Point: 10.5099

>T191805 WP_230338735.1 NZ_CP069798:c2367699-2367403 [Paralysiella testudinis]
MTYKLAFLPSALREWAKLDGSIKTQFKHKLAERLTHPHVPASALRGMHNAYKIKLRQAGFRLVYTVDDGLITVTVVAVGK
RDKNAVYVQAMARMDEEA

Download         Length: 297 bp

>T191805 NZ_CP091913:c5175212-5174868 [Nostoc sp. UHCC 0870]
ATGAAGCGTGGTGATATTTATTACGCTAATCTCAGTCGGACTTTAGGCTCTGAGATGGATAAACGCCGCCCAGTGCTGAT
AGTTAGCAATGATGCTAATAATCGCGCAGCTAGCACGGTAACAATTTTACCCCTTACATCCAATGTCAGCCGTGTTTACC
CCTTCGAGGTTTTACTGAATCCAGAAGATAGTGGTTTACCATTAGCGTCCAAAGTACAGGCGCAGCAGGTAAGAACAATT
TCCAAGCAAAGGATTGTGTCAGAGGTGGTAAATAGTTTAAGTGAAGAGTTGATGCAATTAGTAGATGCGTCTCTCAAACT
ACATTTAGAGTTGGAGAAAAGGTAA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8738.99 Da        Isoelectric Point: 4.1074

>AT191805 WP_230338736.1 NZ_CP069798:c2367931-2367689 [Paralysiella testudinis]
MEAVLADYAVSVTELKRNFAAIVAQADGAVAVLNHNKPEAYLISAQRYQALLAYLEDLEDAKLVQERMGETAVMVALDDL

Download         Length: 243 bp

>AT191805 NZ_CP091913:c5175423-5175199 [Nostoc sp. UHCC 0870]
ATGCAAGTTGAAAAGCTATCAATTTCCTTACCAGCTTCCCTGGTGCAATTTATTGAAGGTTACAAAGTAGCCCATGAATG
TAAATCTCGCTCCCAAGTCATTGAAAAAGCATTGCAGTTGTTGCGAACACAGGAACTAGAACAGGCTTACCGAGAAGCAT
CTGCGGAAGTTGACAATGATTGGGAAATCACGATTACAGATGGATTAACTGATGAAGCGTGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References