Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2012424..2012695 | Replicon | chromosome |
| Accession | NZ_CP069712 | ||
| Organism | Escherichia coli strain EA13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2012554..2012657 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2012424..2012695 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSQ77_RS09570 | 2008980..2009642 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JSQ77_RS09575 | 2009666..2010322 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JSQ77_RS09580 | 2010424..2010654 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JSQ77_RS09585 | 2010793..2011167 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| JSQ77_RS09590 | 2011171..2012043 | + | 873 | WP_000879297.1 | copper homeostasis membrane protein CopD | - |
| JSQ77_RS09595 | 2012056..2012397 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2012424..2012695 | - | 272 | - | - | Antitoxin |
| - | 2012554..2012657 | + | 104 | - | - | Toxin |
| JSQ77_RS09600 | 2012792..2013448 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JSQ77_RS09605 | 2013449..2013640 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JSQ77_RS09610 | 2013745..2013981 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JSQ77_RS09615 | 2014099..2015538 | - | 1440 | WP_204084450.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T191751 NZ_CP069712:2012554-2012657 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT191751 NZ_CP069712:c2012695-2012424 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
