Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 977988..978259 | Replicon | chromosome |
| Accession | NZ_CP069710 | ||
| Organism | Escherichia coli strain EA2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 978026..978129 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 977988..978259 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSQ74_RS04720 | 975145..976584 | + | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JSQ74_RS04725 | 976702..976938 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JSQ74_RS04730 | 977043..977234 | + | 192 | WP_001313035.1 | YebW family protein | - |
| JSQ74_RS04735 | 977235..977891 | - | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| - | 977988..978259 | + | 272 | - | - | Antitoxin |
| - | 978026..978129 | - | 104 | - | - | Toxin |
| JSQ74_RS04740 | 978287..978628 | - | 342 | WP_000976472.1 | YebY family protein | - |
| JSQ74_RS04745 | 978641..979513 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| JSQ74_RS04750 | 979517..979891 | - | 375 | WP_000168736.1 | CopC domain-containing protein YobA | - |
| JSQ74_RS04755 | 980030..980260 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JSQ74_RS04760 | 980362..981018 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JSQ74_RS04765 | 981042..981704 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T191723 NZ_CP069710:c978129-978026 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT191723 NZ_CP069710:977988-978259 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
