Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2093837..2094108 | Replicon | chromosome |
| Accession | NZ_CP069707 | ||
| Organism | Escherichia coli strain E41 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2093967..2094070 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2093837..2094108 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSQ86_RS10150 | 2090392..2091054 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JSQ86_RS10155 | 2091078..2091734 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| JSQ86_RS10160 | 2091836..2092066 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JSQ86_RS10165 | 2092205..2092579 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JSQ86_RS10170 | 2092583..2093455 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| JSQ86_RS10175 | 2093468..2093809 | + | 342 | WP_072145846.1 | YebY family protein | - |
| - | 2093837..2094108 | - | 272 | - | - | Antitoxin |
| - | 2093967..2094070 | + | 104 | - | - | Toxin |
| JSQ86_RS10180 | 2094205..2094861 | + | 657 | WP_061344299.1 | protein-serine/threonine phosphatase | - |
| JSQ86_RS10185 | 2094862..2095053 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JSQ86_RS10190 | 2095158..2095394 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JSQ86_RS10195 | 2095512..2096951 | - | 1440 | WP_061344305.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T191685 NZ_CP069707:2093967-2094070 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT191685 NZ_CP069707:c2094108-2093837 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
