Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2172132..2172403 | Replicon | chromosome |
| Accession | NZ_CP069692 | ||
| Organism | Escherichia coli H20 strain MIN6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2172262..2172365 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2172132..2172403 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSU10_RS10385 | 2168687..2169349 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JSU10_RS10390 | 2169373..2170029 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JSU10_RS10395 | 2170131..2170361 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JSU10_RS10400 | 2170500..2170874 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JSU10_RS10405 | 2170878..2171750 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| JSU10_RS10410 | 2171763..2172104 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2172132..2172403 | - | 272 | - | - | Antitoxin |
| - | 2172262..2172365 | + | 104 | - | - | Toxin |
| JSU10_RS10415 | 2172500..2173156 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JSU10_RS10420 | 2173157..2173348 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JSU10_RS10425 | 2173453..2173689 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JSU10_RS10430 | 2173807..2175246 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T191618 NZ_CP069692:2172262-2172365 [Escherichia coli H20]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT191618 NZ_CP069692:c2172403-2172132 [Escherichia coli H20]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
