Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2126778..2127049 | Replicon | chromosome |
| Accession | NZ_CP069657 | ||
| Organism | Escherichia coli O89m:H10 strain MIN12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2126908..2127011 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2126778..2127049 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSU14_RS10085 | 2123333..2123995 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JSU14_RS10090 | 2124019..2124675 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JSU14_RS10095 | 2124777..2125007 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JSU14_RS10100 | 2125146..2125520 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JSU14_RS10105 | 2125524..2126396 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| JSU14_RS10110 | 2126409..2126750 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2126778..2127049 | - | 272 | - | - | Antitoxin |
| - | 2126908..2127011 | + | 104 | - | - | Toxin |
| JSU14_RS10115 | 2127146..2127802 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JSU14_RS10120 | 2127803..2127994 | - | 192 | WP_000457842.1 | YebW family protein | - |
| JSU14_RS10125 | 2128099..2128335 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JSU14_RS10130 | 2128453..2129892 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T191526 NZ_CP069657:2126908-2127011 [Escherichia coli O89m:H10]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT191526 NZ_CP069657:c2127049-2126778 [Escherichia coli O89m:H10]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
