Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 3883747..3884579 | Replicon | chromosome |
| Accession | NZ_CP069646 | ||
| Organism | Escherichia coli O7:H4 strain MIN14 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | A0A3P5UBZ5 |
| Locus tag | JSU15_RS18830 | Protein ID | WP_001094454.1 |
| Coordinates | 3883747..3884121 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | A0A3G8RJV8 |
| Locus tag | JSU15_RS18835 | Protein ID | WP_001320394.1 |
| Coordinates | 3884211..3884579 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSU15_RS18800 (3878860) | 3878860..3880008 | - | 1149 | WP_000905931.1 | capsule polysaccharide export inner-membrane protein KpsE | - |
| JSU15_RS18805 (3880080) | 3880080..3881063 | - | 984 | WP_024181915.1 | KpsF/GutQ family sugar-phosphate isomerase | - |
| JSU15_RS18810 (3881874) | 3881874..3882044 | - | 171 | Protein_3722 | IS110 family transposase | - |
| JSU15_RS18815 (3882387) | 3882387..3882956 | - | 570 | WP_208231899.1 | DUF4942 domain-containing protein | - |
| JSU15_RS18820 (3883053) | 3883053..3883250 | - | 198 | WP_000839276.1 | DUF957 domain-containing protein | - |
| JSU15_RS18825 (3883262) | 3883262..3883750 | - | 489 | WP_000777545.1 | DUF5983 family protein | - |
| JSU15_RS18830 (3883747) | 3883747..3884121 | - | 375 | WP_001094454.1 | TA system toxin CbtA family protein | Toxin |
| JSU15_RS18835 (3884211) | 3884211..3884579 | - | 369 | WP_001320394.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| JSU15_RS18840 (3884629) | 3884629..3885272 | - | 644 | Protein_3728 | antitoxin of toxin-antitoxin stability system | - |
| JSU15_RS18845 (3885291) | 3885291..3885512 | - | 222 | WP_000692300.1 | DUF987 domain-containing protein | - |
| JSU15_RS18850 (3885575) | 3885575..3886051 | - | 477 | WP_001347688.1 | RadC family protein | - |
| JSU15_RS18855 (3886067) | 3886067..3886552 | - | 486 | WP_029701480.1 | antirestriction protein | - |
| JSU15_RS18860 (3886607) | 3886607..3887425 | - | 819 | WP_001234642.1 | DUF932 domain-containing protein | - |
| JSU15_RS18865 (3887525) | 3887525..3887758 | - | 234 | WP_001119719.1 | DUF905 family protein | - |
| JSU15_RS18870 (3887837) | 3887837..3888292 | - | 456 | WP_000581493.1 | IrmA family protein | - |
| JSU15_RS18875 (3888369) | 3888369..3889367 | - | 999 | Protein_3735 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 14059.10 Da Isoelectric Point: 9.2447
>T191512 WP_001094454.1 NZ_CP069646:c3884121-3883747 [Escherichia coli O7:H4]
MNTLPDTHVRKASRCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEKR
MNTLPDTHVRKASRCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEKR
Download Length: 375 bp
>T191512 NZ_CP091757:53927-54409 [Escherichia coli]
GTGGGACGTATAACCACGCCCGAGCCGTTATCCAGCTCTCATCAGCTGGCTGAGTTCGTCAGTGGAGAGACAGTCCTCGA
TGAATGGCTAAAACAGAGAGGTTTAAAAAATCAAGCTCTTGGCGCTGCCCGAACGTTCGTTGTTTGCAAGACGGGTACGA
AGCAAGTAGCTGGTTTTTACTCTTTGGCCACCGGTAGCGTTAACCATACGGAAGCGACAGGTAGTCTTCGGCGTAACATG
CCAGATCCTATACCGGTGATTATACTCGCTCGCCTGGCGGTAGATGTCTCATTGCACGGAAAAGGGGTTGGCGCCGATTT
ACTCCACGATGCAGTTCTACGGTGTTATCGCGTAGCTGAGAACATTGGGGTTCGTGCGATAATGGTTCATGCGCTTACTG
AAGAAGCCAAAGGTTTCTATGCTCACCATGGATTTAAGGCATCACAAACTCATGAGAGGACTCTGTTTCTAAAGCTTCCA
TGA
GTGGGACGTATAACCACGCCCGAGCCGTTATCCAGCTCTCATCAGCTGGCTGAGTTCGTCAGTGGAGAGACAGTCCTCGA
TGAATGGCTAAAACAGAGAGGTTTAAAAAATCAAGCTCTTGGCGCTGCCCGAACGTTCGTTGTTTGCAAGACGGGTACGA
AGCAAGTAGCTGGTTTTTACTCTTTGGCCACCGGTAGCGTTAACCATACGGAAGCGACAGGTAGTCTTCGGCGTAACATG
CCAGATCCTATACCGGTGATTATACTCGCTCGCCTGGCGGTAGATGTCTCATTGCACGGAAAAGGGGTTGGCGCCGATTT
ACTCCACGATGCAGTTCTACGGTGTTATCGCGTAGCTGAGAACATTGGGGTTCGTGCGATAATGGTTCATGCGCTTACTG
AAGAAGCCAAAGGTTTCTATGCTCACCATGGATTTAAGGCATCACAAACTCATGAGAGGACTCTGTTTCTAAAGCTTCCA
TGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13623.22 Da Isoelectric Point: 6.4783
>AT191512 WP_001320394.1 NZ_CP069646:c3884579-3884211 [Escherichia coli O7:H4]
VSDTFSGTTHPDDNHDRPWWGLPSTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADANHLDQAFPLLMKQLELMFTSS
ELNPHRQNTVTLYAKGLTCHADTLGSCGYVYLAVYPTPETKQ
VSDTFSGTTHPDDNHDRPWWGLPSTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADANHLDQAFPLLMKQLELMFTSS
ELNPHRQNTVTLYAKGLTCHADTLGSCGYVYLAVYPTPETKQ
Download Length: 369 bp
>AT191512 NZ_CP091757:53673-53939 [Escherichia coli]
ATGAAATCAGATGTTCAACTCAACCTAAGAGCTAAAGAGTCTCAGAGAGCACTCATCGATGCTGCTGCAGAGATCCTTCA
TAAATCGCGAACCGACTTTATCCTGGAGATGGCCTGCAAGGCTGCGGAGAATGTGATCCTTGATCGCCGTGTTTTCAATT
TTAACGACGAACAGTATGCAGAGTTCATCGATATGCTCGATGCACCAGTCGAGGATGAGCCCGCCATTAATAAACTACTG
GCAAGGAAACCTCAGTGGGACGTATAA
ATGAAATCAGATGTTCAACTCAACCTAAGAGCTAAAGAGTCTCAGAGAGCACTCATCGATGCTGCTGCAGAGATCCTTCA
TAAATCGCGAACCGACTTTATCCTGGAGATGGCCTGCAAGGCTGCGGAGAATGTGATCCTTGATCGCCGTGTTTTCAATT
TTAACGACGAACAGTATGCAGAGTTCATCGATATGCTCGATGCACCAGTCGAGGATGAGCCCGCCATTAATAAACTACTG
GCAAGGAAACCTCAGTGGGACGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A3P5UBZ5 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A3G8RJV8 |