Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 268173..268444 | Replicon | chromosome |
| Accession | NZ_CP069646 | ||
| Organism | Escherichia coli O7:H4 strain MIN14 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 268303..268406 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 268173..268444 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSU15_RS01370 | 264729..265391 | - | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
| JSU15_RS01375 | 265415..266071 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JSU15_RS01380 | 266173..266403 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JSU15_RS01385 | 266542..266916 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JSU15_RS01390 | 266920..267792 | + | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| JSU15_RS01395 | 267805..268146 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 268173..268444 | - | 272 | - | - | Antitoxin |
| - | 268303..268406 | + | 104 | - | - | Toxin |
| JSU15_RS01400 | 268541..269197 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JSU15_RS01405 | 269198..269389 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JSU15_RS01410 | 269494..269730 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JSU15_RS01415 | 269848..271287 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T191492 NZ_CP069646:268303-268406 [Escherichia coli O7:H4]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT191492 NZ_CP069646:c268444-268173 [Escherichia coli O7:H4]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
