Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 3171737..3172234 Replicon chromosome
Accession NZ_CP069642
Organism Escherichia coli strain SSGNw2

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag JSQ95_RS15000 Protein ID WP_001173343.1
Coordinates 3172061..3172234 (+) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID S1NQ59
Locus tag JSQ95_RS14995 Protein ID WP_001312331.1
Coordinates 3171737..3172033 (+) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JSQ95_RS14975 (3168466) 3168466..3169185 - 720 WP_000611291.1 two-component system response regulator DcuR -
JSQ95_RS14980 (3169182) 3169182..3170813 - 1632 WP_001216466.1 sensor histidine kinase -
JSQ95_RS14985 (3170994) 3170994..3171224 + 231 WP_000371715.1 4Fe-4S mono-cluster protein YjdI -
JSQ95_RS14990 (3171236) 3171236..3171508 + 273 WP_000405647.1 GNAT family N-acetyltransferase -
JSQ95_RS14995 (3171737) 3171737..3172033 + 297 WP_001312331.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
JSQ95_RS15000 (3172061) 3172061..3172234 + 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
JSQ95_RS15005 (3172353) 3172353..3173870 - 1518 WP_000003806.1 lysine--tRNA ligase -
JSQ95_RS15010 (3174107) 3174107..3175564 - 1458 WP_000856826.1 dipeptide/tripeptide permease DtpC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T191482 WP_001173343.1 NZ_CP069642:3172061-3172234 [Escherichia coli]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

>T191482 NZ_CP091752:42900-43241 [Klebsiella grimontii]
ATGTGGGATGTTGAAACAACGGAGGTTTTCGACAAGTGGTTTGAGGCGCAGATCGAAGCGCTTAAAGAGGATATGCTCGC
CGCTATGGTGATCTTATCCGAGTATGGCCCCCAACTCGGAAGGCCGTTTGCGGATACAGTAAACGATTCTGCTTTTTCGA
ATATGAAAGAGCTGCGCGTTCAGCATCGAGGTAGCCCGATCAGAGCTTTCTTTGTATTTGACCCTTCTCGTCGCGGCATC
GTGTTATGCGCCGGAGATAAAACAGGGTTAAATGAAAAGAGATTCTATAAAGATATGATCAAGCTTGCAGATGCTGAGTA
CCGTAAGCACCTTAATCAGTAA

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11440.95 Da        Isoelectric Point: 4.1705

>AT191482 WP_001312331.1 NZ_CP069642:3171737-3172033 [Escherichia coli]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLSIMTVDDYFRQFYK

Download         Length: 297 bp

>AT191482 NZ_CP091752:43251-43550 [Klebsiella grimontii]
ATGGCGACCCTTAAAGAATTAATGGCCAAACAGAGCCCGGAAAGCCAGGCGCGTATTGCTGAAAAAGTCGAAGAAATGCG
CCAGGCTATCGCATTAAGTATGTTAAGGGAAGAACTCAATATGTCTCAGGCAGAGCTGGCTAAGGCAATGGGCGTTAAAC
AACCCACCATTGCAAAAATGGAACAGGCTGATAACGACCCGCGTTTGTCAACGCTGAAGCGTTATGTTGTAGCGCTCGGG
GGGGAACTCAGTATTGATGTTAAGCTGCCAACCGGTAAGCGAATCGCATTCCATCTTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
AlphaFold DB S1NQ59

References