191224

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 986840..988560 Replicon chromosome
Accession NZ_CP069603
Organism Dickeya dianthicola strain 16LI01

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag JRZ91_RS04610 Protein ID WP_103415840.1
Coordinates 987904..988560 (-) Length 219 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID A0A3A4C958
Locus tag JRZ91_RS04605 Protein ID WP_024104822.1
Coordinates 986840..987907 (-) Length 356 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JRZ91_RS04580 (JRZ91_04580) 981980..982306 - 327 Protein_894 molybdopterin-guanine dinucleotide biosynthesis protein MobC -
JRZ91_RS04590 (JRZ91_04590) 982534..982716 - 183 WP_024109619.1 hypothetical protein -
JRZ91_RS04595 (JRZ91_04595) 982865..983581 - 717 WP_103415838.1 SprT family zinc-dependent metalloprotease -
JRZ91_RS04600 (JRZ91_04600) 983581..986676 - 3096 WP_103415839.1 HsdR family type I site-specific deoxyribonuclease -
JRZ91_RS04605 (JRZ91_04605) 986840..987907 - 1068 WP_024104822.1 macro domain-containing protein Antitoxin
JRZ91_RS04610 (JRZ91_04610) 987904..988560 - 657 WP_103415840.1 DUF4433 domain-containing protein Toxin
JRZ91_RS04615 (JRZ91_04615) 988563..989138 - 576 WP_024104824.1 DarT ssDNA thymidine ADP-ribosyltransferase family protein -
JRZ91_RS04620 (JRZ91_04620) 989143..990504 - 1362 WP_024104825.1 restriction endonuclease subunit S -
JRZ91_RS04625 (JRZ91_04625) 990504..992939 - 2436 WP_024108177.1 type I restriction-modification system subunit M -
JRZ91_RS04630 (JRZ91_04630) 992979..993218 - 240 WP_024104827.1 hypothetical protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(17-217)

Antitoxin

(18-129)


Sequences


Toxin        


Download         Length: 219 a.a.        Molecular weight: 25135.60 Da        Isoelectric Point: 7.2459

>T191224 WP_103415840.1 NZ_CP069603:c988560-987904 [Dickeya dianthicola]
VAYDYSANLNPEKALIWRIVHRDNIPWILDNGLHCGNSPVQAANWINIGNPELINRRAGHPVPAGAGGTLHDYVPFYFTP
FSPMLMNIHSGRGGIKQRPNEEIVILVSSLRHVAIQNVPFVFTDSHAYYNLANYYTDLNNLHRIDWPILQARDFRRDQDD
LAKFERYQAEALIWQHCPITLLVGMICYNDGVRLQLEQWLSQRNLTMPVHARAGWYFS

Download         Length: 657 bp

>T191224 NZ_CP091662:3593090-3593368 [Escherichia coli]
ATGATTCAAAGGGATATTGAATACTCGGGACAATATTCAAAGGATGTAAAACTTGCACAAAAGCGTCATAAGGATATGAA
TAAATTGAAATATCTTATGACGCTTCTTATCAATAATACTTTACCGCTTCCAGCTGTTTATAAAGACCACCCGCTGCAAG
GTTCATGGAAAGGTTATCGCGATGCTCATGTCGAACCGGACTGGATCCTGATTTACAAACTTACCGATAAACTTTTACGA
TTTGAGAGAACTGGAACTCACGCGGCGCTCTTTGGGTAA

Antitoxin


Download         Length: 356 a.a.        Molecular weight: 40767.89 Da        Isoelectric Point: 5.4873

>AT191224 WP_024104822.1 NZ_CP069603:c987907-986840 [Dickeya dianthicola]
MMTYTQGNLLDAPVEALVNTVNTVGVMGKGIALMFKERFPDNMKAYALACKQKQVTTGKMFITETDELMGPRWIVNFPTK
QHWRADSRMEWIEDGLQDLRRFLIEEKVQSIAIPPLGAGNGGLNWSDVQARIESALGDLQDTEILIYEPTEKYQNVAKST
GVKKLTPARAMIAELVRRYWVLGMECSLLEIQKLAWLLQRAIEQHQQEDVLKLRFEAHNYGPYAPNLNHLLNALDGTYLK
AEKRIPDSQPLDVIWFNDREKEHINLWLNNEAKAWLPALEQVSQLIDGFESPFGLELLATVDWLLTRGECQPTLDSVKEG
LHQWPAGERWASRKMKLFDDKNLQFAINRVMEFHC

Download         Length: 1068 bp

>AT191224 NZ_CP091662:3592827-3593087 [Escherichia coli]
ATGGCTGCTAACGCGTTTGTTCGCGCCCGAATCGATGAAGATCTGAAGAATCAGGCAGCGGACGTACTGGCCGGGATGGG
GCTGACCATCTCTGACCTGGTTCGCATAACCCTCACAAAGGTCGCGCGTGAAAAGGCATTGCCGTTTGATTTACGCGAGC
CTAATCAATTAACCATTCAATCAATCAAAAACAGCGAAGCTGGCATTGATGTTCATAAGGCCAAAGACGCCGATGATTTA
TTTGATAAATTAGGAATTTAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure
AlphaFold DB A0A3A4C958

References