Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2266675..2266757 | Replicon | chromosome |
| Accession | NZ_CP069601 | ||
| Organism | Dickeya dianthicola strain 16LI04 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2266677..2266757 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2266675..2266757 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JRZ89_RS10400 (JRZ89_10395) | 2262115..2262339 | - | 225 | WP_024105836.1 | hypothetical protein | - |
| JRZ89_RS10405 (JRZ89_10400) | 2262676..2263077 | + | 402 | WP_024105837.1 | hypothetical protein | - |
| JRZ89_RS22495 | 2263230..2263358 | + | 129 | WP_029729479.1 | hypothetical protein | - |
| JRZ89_RS10410 (JRZ89_10405) | 2263623..2264228 | + | 606 | WP_024105838.1 | hypothetical protein | - |
| JRZ89_RS10415 (JRZ89_10410) | 2264368..2264601 | + | 234 | WP_024105839.1 | hypothetical protein | - |
| JRZ89_RS10420 (JRZ89_10415) | 2264825..2264983 | - | 159 | WP_162928372.1 | hypothetical protein | - |
| JRZ89_RS10425 (JRZ89_10420) | 2265491..2265997 | + | 507 | WP_144414575.1 | hypothetical protein | - |
| - | 2266675..2266757 | + | 83 | - | - | Antitoxin |
| - | 2266677..2266757 | - | 81 | - | - | Toxin |
| JRZ89_RS10430 (JRZ89_10425) | 2266927..2267265 | - | 339 | WP_024105843.1 | YebY family protein | - |
| JRZ89_RS10435 (JRZ89_10430) | 2267739..2268155 | + | 417 | WP_046830401.1 | hypothetical protein | - |
| JRZ89_RS10440 (JRZ89_10435) | 2268487..2268735 | + | 249 | WP_024105845.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| JRZ89_RS10445 (JRZ89_10440) | 2268997..2270271 | - | 1275 | WP_024105846.1 | YeaH/YhbH family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2255185..2268735 | 13550 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T191194 NZ_CP069601:c2266757-2266677 [Dickeya dianthicola]
AATGCCAACTTTTAGCGCACGGCTCTCTCCAAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCAAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 83 bp
>AT191194 NZ_CP069601:2266675-2266757 [Dickeya dianthicola]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTTGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTTGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
